Source: ALL

Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Disease Score vda EI vda N. PMIDs First Ref. Last Ref.
dbSNP: rs2476601
rs2476601
PTPN22 ; AP4B1-AS1
0.498 0.800 1 113834946 missense variant A/G snv 0.93 0.93
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.040 0.750 4 2009 2017
dbSNP: rs2367707
rs2367707
EREG
0.925 0.080 4 74382717 synonymous variant A/G snv 0.79 0.79
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs5743810
rs5743810
TLR1 ; TLR6
0.689 0.360 4 38828729 missense variant A/G snv 0.73 0.72
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2010 2010
dbSNP: rs1554286
rs1554286
IL10 ; IL19
0.790 0.320 1 206770888 5 prime UTR variant A/G;T snv 0.72
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2018 2018
dbSNP: rs2910164
rs2910164
MIR146A ; MIR3142HG
0.447 0.880 5 160485411 mature miRNA variant C/G snv 0.71; 4.1E-06 0.70
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2011 2011
dbSNP: rs1042714
rs1042714
ADRB2
0.597 0.640 5 148826910 stop gained G/C;T snv 0.68
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs2228570
rs2228570
VDR
0.521 0.760 12 47879112 start lost A/C;G;T snv 0.63
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs5743618
rs5743618
TLR1
0.677 0.360 4 38797027 missense variant C/A snv 0.53 0.51
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.040 1.000 4 2010 2016
dbSNP: rs352139
rs352139
TLR9
0.732 0.320 3 52224356 intron variant T/C snv 0.51 0.54
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.020 1.000 2 2015 2019
dbSNP: rs7975232
rs7975232
VDR
0.576 0.760 12 47845054 intron variant C/A snv 0.51 0.55
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs352140
rs352140
TLR9
0.630 0.680 3 52222681 synonymous variant C/A;G;T snv 2.0E-05; 0.49
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2018 2018
dbSNP: rs7518660
rs7518660
IL23R ; C1orf141
0.925 0.120 1 67219760 intron variant G/A snv 0.43 0.47
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2015 2015
dbSNP: rs7749390
rs7749390
IFNGR1
0.882 0.120 6 137219233 5 prime UTR variant A/G;T snv 0.43; 4.4E-06
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs1042713
rs1042713
ADRB2
0.576 0.800 5 148826877 missense variant G/A snv 0.42 0.43
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2017 2017
dbSNP: rs1135791
rs1135791
SP110
0.925 0.080 2 230177560 missense variant A/G snv 0.42 0.40
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 < 0.001 1 2017 2017
dbSNP: rs3804099
rs3804099
TLR2
0.627 0.680 4 153703504 synonymous variant T/C snv 0.40 0.48
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.040 0.750 4 2013 2019
dbSNP: rs1718119
rs1718119
P2RX7 ; LOC105370032
0.689 0.520 12 121177300 missense variant G/A;T snv 0.35; 4.0E-06
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2013 2013
dbSNP: rs1041981
rs1041981
LTA ; LOC100287329
0.667 0.520 6 31573007 missense variant C/A snv 0.35 0.38
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2012 2012
dbSNP: rs4740
rs4740
EBI3
0.827 0.240 19 4236999 missense variant G/A snv 0.34 0.39
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2015 2015
dbSNP: rs731236
rs731236
VDR
0.542 0.760 12 47844974 synonymous variant A/G snv 0.33 0.34
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs241447
rs241447
TAP2
0.827 0.280 6 32828974 missense variant T/C snv 0.31 0.26
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2016 2016
dbSNP: rs3764880
rs3764880
TLR8 ; TLR8-AS1
0.752 0.320 X 12906707 start lost A/G snv 0.31 0.30
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.030 1.000 3 2011 2019
dbSNP: rs549908
rs549908
IL18
0.752 0.440 11 112150193 synonymous variant T/A;G snv 4.2E-06; 0.29
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2019 2019
dbSNP: rs2229094
rs2229094
LTA ; LOC100287329
0.776 0.320 6 31572779 missense variant T/C snv 0.27 0.27
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2012 2012
dbSNP: rs7958311
rs7958311
P2RX7 ; LOC105370032
0.851 0.160 12 121167552 missense variant G/A;C snv 0.25; 4.0E-06
CUI: C0041327
Disease: Tuberculosis, Pulmonary
Tuberculosis, Pulmonary 		0.010 1.000 1 2016 2016